Citing BioMASS

If you use BioMASS in your research, please cite the following paper:

  • Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. Cancers 12, 2878 (2020). https://doi.org/10.3390/cancers12102878

In BibTeX format:

@article{cancers12102878,
  author         = {Imoto, Hiroaki and Zhang, Suxiang and Okada, Mariko},
  title          = {A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway},
  journal        = {Cancers},
  volume         = {12},
  year           = {2020},
  number         = {10},
  article-number = {2878},
  url            = {https://www.mdpi.com/2072-6694/12/10/2878},
  issn           = {2072-6694},
  doi            = {10.3390/cancers12102878}
}

If you construct a mathematical model using biomass.construction.text2model.Text2Model, please also cite the Pasmopy paper:

In BibTeX format:

@article{imoto2022text,
  title     = {A text-based computational framework for patient-specific modeling for classification of cancers},
  author    = {Imoto, Hiroaki and Yamashiro, Sawa and Okada, Mariko},
  journal   = {iScience},
  volume    = {25},
  number    = {3},
  pages     = {103944},
  year      = {2022},
  publisher = {Elsevier},
  doi       = {10.1016/ j.isci.2022.103944},
  url       = {https://www.cell.com/iscience/fulltext/S2589-0042(22)00214-0}
}

When presenting work that uses BioMASS, feel free to use the logo.

_images/biomass-logo.png