Citing BioMASS
If you use BioMASS in your research, please cite the following paper:
Arakane, K., Imoto, H., Ormersbach, F. & Okada, M. Extending BioMASS to construct mathematical models from external knowledge. Bioinformatics Advances 4, vbae042 (2024). https://doi.org/10.1093/bioadv/vbae042
In BibTeX format:
@article{10.1093/bioadv/vbae042,
author = {Arakane, Kiwamu and Imoto, Hiroaki and Ormersbach, Fabian and Okada, Mariko},
title = "{Extending BioMASS to construct mathematical models from external knowledge}",
journal = {Bioinformatics Advances},
volume = {4},
number = {1},
pages = {vbae042},
year = {2024},
month = {04},
issn = {2635-0041},
doi = {10.1093/bioadv/vbae042},
url = {https://doi.org/10.1093/bioadv/vbae042},
eprint = {https://academic.oup.com/bioinformaticsadvances/advance-article-pdf/doi/10.1093/bioadv/vbae042/57163215/vbae042.pdf},
}
If you construct a mathematical model using biomass.construction.text2model.Text2Model
, please also cite the Pasmopy paper:
Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. iScience 25, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944
In BibTeX format:
@article{imoto2022text,
title = {A text-based computational framework for patient-specific modeling for classification of cancers},
author = {Imoto, Hiroaki and Yamashiro, Sawa and Okada, Mariko},
journal = {iScience},
volume = {25},
number = {3},
pages = {103944},
year = {2022},
publisher = {Elsevier},
doi = {10.1016/ j.isci.2022.103944},
url = {https://www.cell.com/iscience/fulltext/S2589-0042(22)00214-0}
}
When presenting work that uses BioMASS, feel free to use the logo.