API

• BioMASS model object (biomass.model_object)
  • ModelObject
• Example models (biomass.models)
  • copy_to_current()
• Construction of executable models from text (biomass.construction)
  • Thermodynamic restrictions (biomass.construction.thermodynamic_restrictions)
  • Available reaction rules (biomass.construction.reaction_rules)
  • Text-to-model conversion (biomass.construction.text2model)
  • Template for BioMASS model construction (biomass.construction.template)
• BioMASS core functions (biomass.core)
  • Model
  • create_model()
  • optimize()
  • run_analysis()
  • run_simulation()
• Optimization results (biomass.results)
  • OptimizationResults
• Parameter estimation (biomass.estimation.optimizer)
  • Optimizer
  • InitialPopulation
• Visualization options (biomass.plotting)
  • MultipleObservables
  • SensitivityOptions
  • SingleObservable